API for Rcade
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
| Global functions | |
|---|---|
| .onAttach | Source code |
| Rcade-class | Man page |
| RcadeAnalysis | Man page Source code |
| RcadeSTAT1 | Man page |
| RcadeTrack-class | Man page |
| checkTargets | Source code |
| constructRcadeTable | Man page Source code |
| countReads | Man page Source code |
| cumsumbackwards | Source code |
| defineBins | Man page Source code |
| describeGR | Source code |
| describeMx | Source code |
| describeVec | Source code |
| diffCountsBaySeq | Man page Source code |
| expit | Source code |
| exportRcade | Man page |
| exportRcade,Rcade-method | Man page |
| exportRcade-methods | Man page |
| getBamChrs | Source code |
| getChIP | Man page |
| getChIP,Rcade-method | Man page |
| getChIP<- | Man page |
| getChIP<-,Rcade-method | Man page |
| getDE | Man page |
| getDE,Rcade-method | Man page |
| getDE<- | Man page |
| getDE<-,Rcade-method | Man page |
| getRcade | Man page |
| getRcade,Rcade-method | Man page |
| getRcade<- | Man page |
| getRcade<-,Rcade-method | Man page |
| logit | Source code |
| minFDR | Source code |
| outputWriteFunction | Source code |
| plotBB | Man page |
| plotBB,Rcade-method | Man page |
| plotBBB | Man page |
| plotBBB,Rcade-method | Man page |
| plotMM | Man page |
| plotMM,Rcade-method | Man page |
| plotPCA | Man page |
| plotPCA,Rcade-method | Man page |
| sanitizeDElookup | Source code |
