Files in Rcade
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data

TODO
NEWS
README
NAMESPACE
.BBSoptions
DESCRIPTION
vignettes/plotBBB.png
vignettes/Rcade.Rnw
inst/CITATION
inst/doc/Rcade.R
inst/doc/Rcade.Rnw
inst/doc/Rcade.pdf inst/unitTests/test_modules.R
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam.bai
inst/extdata/STAT1/DE.csv
inst/extdata/STAT1/anno.csv
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam
inst/extdata/STAT1/targets.csv
R/checkTargets.R R/AllGenerics.R R/RcadeTrack-Methods.R R/diffCountsBaySeq.R R/zzz.R R/Rcade-OutputMethods.R R/aaa.R R/constructRcadeTable.R R/sanitizeDElookup.R R/AllClasses.R R/RcadeAnalysis.R R/Rcade-PlotMethods.R R/Rcade-Methods.R R/countReads.R R/defineBins.R tests/runTests.R man/exportRcade-methods.Rd man/diffCountsBaySeq.Rd man/RcadeTrack-class.Rd man/defineBins.Rd man/countReads.Rd man/RcadeSTAT1.Rd man/constructRcadeTable.Rd man/Rcade-class.Rd man/RcadeAnalysis.Rd
build/vignette.rds
data/datalist
data/RcadeSTAT1.rda
Rcade documentation built on Nov. 17, 2017, 9:03 a.m.