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inst/examples/example_reRank.R
In RcisTarget: RcisTarget: Identify transcription factor binding motifs enriched on a gene list
library(RcisTarget.hg19.motifDBs.cisbpOnly.500bp)
data(hg19_500bpUpstream_motifRanking_cispbOnly)
motifRankings <- hg19_500bpUpstream_motifRanking_cispbOnly
genes <- colnames(getRanking(motifRankings))[10:20]
reRank(motifRankings, columns=genes)
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RcisTarget documentation built on Nov. 8, 2020, 6:57 p.m.
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library(RcisTarget.hg19.motifDBs.cisbpOnly.500bp)
data(hg19_500bpUpstream_motifRanking_cispbOnly)
motifRankings <- hg19_500bpUpstream_motifRanking_cispbOnly
genes <- colnames(getRanking(motifRankings))[10:20]
reRank(motifRankings, columns=genes)
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