Files in RcisTarget

RcisTarget: Identify transcription factor binding motifs enriched on a gene list

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/motifAnnotations_dmel.RData

data/motifAnnotations_mgi_v8.RData

data/datalist

data/motifAnnotations_hgnc.RData

data/motifAnnotations_hgnc_v8.RData

data/motifAnnotations_mgi.RData

data/motifAnnotations_dmel_v8.RData

R/00_importRankings.R R/priv_calcErn.R R/00_importAnnotations.R R/class_aucScores.R R/02_addMotifAnnotation.R R/01_calcAUC.R R/data_motifAnnotations.R R/aux_addLogo.R R/03_addSignificantGenes.R R/priv_plotRCC.R R/10_cisTarget.R R/aux_reRank.R R/class_rankingRcisTarget.R vignettes/RcisTarget.Rmd

vignettes/corrected.css

man/aucScores-class.Rd man/reRank.Rd man/rankingRcisTarget-class.Rd man/importAnnotations.Rd man/motifAnnotations.Rd man/calcAUC.Rd man/importRankings.Rd man/addSignificantGenes.Rd man/RcisTarget.Rd man/getMotifAnnotation.Rd man/addLogo.Rd man/addMotifAnnotation.Rd tests/testthat.R tests/testthat/test_RcisTarget.R

inst/NEWS

inst/CITATION

inst/doc/RcisTarget.html

inst/doc/RcisTarget.Rmd inst/doc/RcisTarget.R

inst/examples/motifEnrichmentTable_wGenes.RData

inst/examples/randomGeneSet.txt

inst/examples/hypoxiaGeneSet.txt

inst/examples/example_workflow.R inst/examples/example_cisTarget.R inst/examples/example_reRank.R inst/examples/example_addLogo.R

inst/examples/motifEnrichmentTable.RData

inst/examples/example_aucScores_class.R inst/examples/example_addMotifAnnotation.R inst/examples/example_addSignificantGenes.R

RcisTarget documentation built on Nov. 8, 2020, 6:57 p.m.