ReadqPCR: Read qPCR data
Version 1.22.0

The package provides functions to read raw RT-qPCR data of different platforms.

AuthorJames Perkins, Matthias Kohl, Nor Izayu Abdul Rahman
Bioconductor views DataImport GeneExpression MicrotitrePlateAssay qPCR
Date of publicationNone
MaintainerJames Perkins <j.perkins@ucl.ac.uk>
LicenseLGPL-3
Version1.22.0
URL http://www.bioconductor.org/packages/release/bioc/html/ReadqPCR.html
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ReadqPCR")

Getting started

Package overview

Popular man pages

merge: Generic Function for Merging eSet and AnnotatedDataFrame
qPCRBatch-class: Class qPCRBatch
readLC480: Read in raw qPCR data of Light Cycler 480
readLC480SampleInfo: Read sample information data of a qPCR experiment from Light...
read.qPCR: Read user formatted qPCR data and produce a qPCRBatch
ReadqPCR-package: Read qPCR data
read.taqman: Read Taqman qPCR data and produce a qPCRBatch
See all...

All man pages Function index File listing

Man pages

CyclesSet-class: Class CyclesSet
merge: Generic Function for Merging eSet and AnnotatedDataFrame
qpcR2CyclesSet: Transform a dataset from qpcR Package into CyclesSet
qPCRBatch-class: Class qPCRBatch
readLC480: Read in raw qPCR data of Light Cycler 480
readLC480SampleInfo: Read sample information data of a qPCR experiment from Light...
read.qPCR: Read user formatted qPCR data and produce a qPCRBatch
ReadqPCR-package: Read qPCR data
read.taqman: Read Taqman qPCR data and produce a qPCRBatch

Functions

CyclesSet Man page
CyclesSet-class Man page
ReadqPCR Man page
ReadqPCR-package Man page
checkValidTaqmanFilenames Man page Source code
checkValidqPCRFilename Man page Source code
class:CyclesSet Man page
class:qPCRBatch Man page
effs Man page
effs,qPCRBatch-method Man page
effs<- Man page
effs<-,qPCRBatch-method Man page
exprs,CyclesSet-method Man page
exprs,qPCRBatch-method Man page
exprs.well.order Man page
exprs.well.order,qPCRBatch-method Man page
exprs.well.order<- Man page
exprs.well.order<-,qPCRBatch-method Man page
exprs<-,CyclesSet-method Man page
exprs<-,qPCRBatch-method Man page
merge Man page
merge,AnnotatedDataFrame,eSet-method Man page
merge,eSet,AnnotatedDataFrame-method Man page
merge-methods Man page
qPCRBatch Man page
qPCRBatch-class Man page
qSet Man page
qpcR2CyclesSet Man page Source code
read.LC480 Man page Source code
read.LC480SampleInfo Man page Source code
read.TaqBatch Source code
read.qPCR Man page Source code Source code
read.taqman Man page Source code
readLC480txt Source code
readLC480xml Source code
read_TaqBatch Man page
read_qPCRBatch Man page
se.effs Man page
se.effs,qPCRBatch-method Man page
se.effs<- Man page
se.effs<-,qPCRBatch-method Man page
se.exprs,qPCRBatch-method Man page
se.exprs<-,qPCRBatch-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/AllGeneric.R
R/CyclesSet-methods.R
R/merge.R
R/qPCRBatch-methods.R
R/qpcR2CyclesSet.R
R/readLC480.R
R/readLC480SampleInfo.R
R/readqPCRData.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/ReadqPCR.R
inst/doc/ReadqPCR.Rnw
inst/doc/ReadqPCR.pdf
inst/exData
inst/exData/Efficiencies.txt
inst/exData/LC480_Example.txt
inst/exData/LC480_Example_SampleInfo.txt
inst/exData/example.txt
inst/exData/example2.txt
inst/exData/exampleTechReps.txt
inst/exData/exampleWithPlateNames.txt
inst/exData/exampleWithPlateNames2.txt
inst/exData/qPCR.example.txt
inst/exData/qPCR.noPlateOrWell.txt
inst/exData/qPCR.techReps.txt
man
man/CyclesSet-class.Rd
man/ReadqPCR-package.Rd
man/merge.Rd
man/qPCRBatch-class.Rd
man/qpcR2CyclesSet.Rd
man/read.qPCR.Rd
man/read.taqman.Rd
man/readLC480.Rd
man/readLC480SampleInfo.Rd
vignettes
vignettes/ReadqPCR.Rnw
ReadqPCR documentation built on May 20, 2017, 10:25 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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