ReadqPCR: Read qPCR data

The package provides functions to read raw RT-qPCR data of different platforms.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ReadqPCR")
AuthorJames Perkins, Matthias Kohl, Nor Izayu Abdul Rahman
Bioconductor views DataImport GeneExpression MicrotitrePlateAssay qPCR
Date of publicationNone
MaintainerJames Perkins <j.perkins@ucl.ac.uk>
LicenseLGPL-3
Version1.20.0
http://www.bioconductor.org/packages/release/bioc/html/ReadqPCR.html

View on Bioconductor

Functions

checkValidqPCRFilename Man page
checkValidTaqmanFilenames Man page
class:CyclesSet Man page
class:qPCRBatch Man page
CyclesSet Man page
CyclesSet-class Man page
effs Man page
effs<- Man page
effs<-,qPCRBatch-method Man page
effs,qPCRBatch-method Man page
exprs<-,CyclesSet-method Man page
exprs,CyclesSet-method Man page
exprs<-,qPCRBatch-method Man page
exprs,qPCRBatch-method Man page
exprs.well.order Man page
exprs.well.order<- Man page
exprs.well.order<-,qPCRBatch-method Man page
exprs.well.order,qPCRBatch-method Man page
merge Man page
merge,AnnotatedDataFrame,eSet-method Man page
merge,eSet,AnnotatedDataFrame-method Man page
merge-methods Man page
qpcR2CyclesSet Man page
qPCRBatch Man page
qPCRBatch-class Man page
qSet Man page
read.LC480 Man page
read.LC480SampleInfo Man page
read.qPCR Man page
ReadqPCR Man page
read_qPCRBatch Man page
ReadqPCR-package Man page
read_TaqBatch Man page
read.taqman Man page
se.effs Man page
se.effs<- Man page
se.effs<-,qPCRBatch-method Man page
se.effs,qPCRBatch-method Man page
se.exprs<-,qPCRBatch-method Man page
se.exprs,qPCRBatch-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGeneric.R R/CyclesSet-methods.R R/merge.R R/qPCRBatch-methods.R R/qpcR2CyclesSet.R R/readLC480.R R/readLC480SampleInfo.R R/readqPCRData.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/ReadqPCR.R
inst/doc/ReadqPCR.Rnw
inst/doc/ReadqPCR.pdf
inst/exData
inst/exData/Efficiencies.txt
inst/exData/LC480_Example.txt
inst/exData/LC480_Example_SampleInfo.txt
inst/exData/example.txt
inst/exData/example2.txt
inst/exData/exampleTechReps.txt
inst/exData/exampleWithPlateNames.txt
inst/exData/exampleWithPlateNames2.txt
inst/exData/qPCR.example.txt
inst/exData/qPCR.noPlateOrWell.txt
inst/exData/qPCR.techReps.txt
man
man/CyclesSet-class.Rd man/ReadqPCR-package.Rd man/merge.Rd man/qPCRBatch-class.Rd man/qpcR2CyclesSet.Rd man/read.qPCR.Rd man/read.taqman.Rd man/readLC480.Rd man/readLC480SampleInfo.Rd
vignettes
vignettes/ReadqPCR.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.