ReadqPCR: Read qPCR data

The package provides functions to read raw RT-qPCR data of different platforms.

Author
James Perkins, Matthias Kohl, Nor Izayu Abdul Rahman
Date of publication
None
Maintainer
James Perkins <j.perkins@ucl.ac.uk>
License
LGPL-3
Version
1.20.0
URLs

View on Bioconductor

Man pages

CyclesSet-class
Class CyclesSet
merge
Generic Function for Merging eSet and AnnotatedDataFrame
qpcR2CyclesSet
Transform a dataset from qpcR Package into CyclesSet
qPCRBatch-class
Class qPCRBatch
readLC480
Read in raw qPCR data of Light Cycler 480
readLC480SampleInfo
Read sample information data of a qPCR experiment from Light...
read.qPCR
Read user formatted qPCR data and produce a qPCRBatch
ReadqPCR-package
Read qPCR data
read.taqman
Read Taqman qPCR data and produce a qPCRBatch

Files in this package

ReadqPCR/DESCRIPTION
ReadqPCR/NAMESPACE
ReadqPCR/R
ReadqPCR/R/AllClasses.R
ReadqPCR/R/AllGeneric.R
ReadqPCR/R/CyclesSet-methods.R
ReadqPCR/R/merge.R
ReadqPCR/R/qPCRBatch-methods.R
ReadqPCR/R/qpcR2CyclesSet.R
ReadqPCR/R/readLC480.R
ReadqPCR/R/readLC480SampleInfo.R
ReadqPCR/R/readqPCRData.R
ReadqPCR/build
ReadqPCR/build/vignette.rds
ReadqPCR/inst
ReadqPCR/inst/CITATION
ReadqPCR/inst/doc
ReadqPCR/inst/doc/ReadqPCR.R
ReadqPCR/inst/doc/ReadqPCR.Rnw
ReadqPCR/inst/doc/ReadqPCR.pdf
ReadqPCR/inst/exData
ReadqPCR/inst/exData/Efficiencies.txt
ReadqPCR/inst/exData/LC480_Example.txt
ReadqPCR/inst/exData/LC480_Example_SampleInfo.txt
ReadqPCR/inst/exData/example.txt
ReadqPCR/inst/exData/example2.txt
ReadqPCR/inst/exData/exampleTechReps.txt
ReadqPCR/inst/exData/exampleWithPlateNames.txt
ReadqPCR/inst/exData/exampleWithPlateNames2.txt
ReadqPCR/inst/exData/qPCR.example.txt
ReadqPCR/inst/exData/qPCR.noPlateOrWell.txt
ReadqPCR/inst/exData/qPCR.techReps.txt
ReadqPCR/man
ReadqPCR/man/CyclesSet-class.Rd
ReadqPCR/man/ReadqPCR-package.Rd
ReadqPCR/man/merge.Rd
ReadqPCR/man/qPCRBatch-class.Rd
ReadqPCR/man/qpcR2CyclesSet.Rd
ReadqPCR/man/read.qPCR.Rd
ReadqPCR/man/read.taqman.Rd
ReadqPCR/man/readLC480.Rd
ReadqPCR/man/readLC480SampleInfo.Rd
ReadqPCR/vignettes
ReadqPCR/vignettes/ReadqPCR.Rnw