qpcR2CyclesSet: Transform a dataset from qpcR Package into CyclesSet
In ReadqPCR: Read qPCR data

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/qpcR2CyclesSet.R

Transform a dataset from package qpcR into an object of class "CyclesSet".

1	qpcR2CyclesSet(x, cyc = 1, cycleThreshold)

`x`	the name of the dataset from package qpcR to be transformed.
`cyc`	the column number which contains cycle data.
`cycleThreshold`	maximum number of cycles which the data will be counted and transformed.

Allows the user to transform a dataset from package qpcR into an object of class "CyclesSet" class, alongside phenotypic data.

Object of class "CyclesSet".

Nor Izayu Abdul Rahman, Matthias Kohl Matthias.Kohl@stamats.de

Perkins, JR, Dawes, JM, McMahon, SB, Bennett, DL, Orengo, C, Kohl, M (2012). ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) data. BMC Genomics, 13, 1:296.

reps, CyclesSet-class

  library(qpcR)

  ## Transform the reps dataset from qpcR Package 
  ## with maximum cycle to be read in the value is 45.
  repsdata <- qpcR2CyclesSet(reps, cyc=1, cycleThreshold=45)
  
  ## Transform the batsch1 dataset from qpcR Package 
  ## with maximum cycle to be read in the value is 40.
  batsch1data <- qpcR2CyclesSet(batsch1, cyc=1, cycleThreshold=40)