saveSBML: Saves an SBMLR object to an SBML file.

Description

This function converts a class SBMLR model object into an SBML level 2 version 1 file.

Usage

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saveSBML(model,filename)

Arguments

model

The S3 SBMLR model object.

filename

The name of the SBML file

Details

The output file is SBML level 2.

Value

No value returned.

Warning

SBML events and function definitions are NOT implemented.

Note

The SBML file is written incrementally, rather than first built as a DOM in R and then saved using xmlSave.

Author(s)

Tom Radivoyevitch

References

Radivoyevitch, T. A two-way interface between limited Systems Biology Markup Language and R. BMC Bioinformatics 5, 190 (2004).

See Also

saveSBMLR

Examples

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library(SBMLR)
curtoR=readSBMLR(file.path(system.file(package="SBMLR"), "models/curto.r"))  
saveSBML(curtoR,"curtoR.xml") 
curtoX=readSBML("curtoR.xml")  
curtoX==curtoR
summary(curtoR)
unlink("curtoR.xml")

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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