SIMAT: GC-SIM-MS data processing and alaysis tool

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

AuthorMo R. Nezami Ranjbar <nranjbar@vt.edu>
Date of publicationNone
MaintainerMo R. Nezami Ranjbar <nranjbar@vt.edu>
LicenseGPL-2
Version1.6.1
http://omics.georgetown.edu/SIMAT.html

View on Bioconductor

Files in this package

SIMAT/DESCRIPTION
SIMAT/NAMESPACE
SIMAT/NEWS
SIMAT/R
SIMAT/R/getEIC.R SIMAT/R/getPeak.R SIMAT/R/getPeakScore.R SIMAT/R/getRI.R SIMAT/R/getRIStandard.R SIMAT/R/getScore.R SIMAT/R/getTarget.R SIMAT/R/getTargetTable.R SIMAT/R/optFrag.R SIMAT/R/plotEIC.R SIMAT/R/plotTIC.R SIMAT/R/putTargetTable.R SIMAT/R/readCDF.R SIMAT/R/readMSL.R SIMAT/R/writeMSL.R
SIMAT/SIMAT
SIMAT/build
SIMAT/build/vignette.rds
SIMAT/data
SIMAT/data/Library.rda
SIMAT/data/RItable.rda
SIMAT/data/Run.rda
SIMAT/data/Targets.rda
SIMAT/data/target.table.rda
SIMAT/inst
SIMAT/inst/doc
SIMAT/inst/doc/SIMAT-vignette.R
SIMAT/inst/doc/SIMAT-vignette.Rnw
SIMAT/inst/doc/SIMAT-vignette.pdf
SIMAT/inst/extdata
SIMAT/inst/extdata/1_QC.CDF
SIMAT/inst/extdata/RIStandards.csv
SIMAT/inst/extdata/TargetTable.txt
SIMAT/inst/extdata/Targets_1.MSL
SIMAT/inst/unitTests
SIMAT/inst/unitTests/test_getEIC.R
SIMAT/inst/unitTests/test_getPeak.R
SIMAT/inst/unitTests/test_getPeakScore.R
SIMAT/inst/unitTests/test_getRI.R
SIMAT/inst/unitTests/test_getRIStandard.R
SIMAT/inst/unitTests/test_getScore.R
SIMAT/inst/unitTests/test_getTarget.R
SIMAT/inst/unitTests/test_getTargetTable.R
SIMAT/inst/unitTests/test_optFrag.R
SIMAT/inst/unitTests/test_plotEIC.R
SIMAT/inst/unitTests/test_plotTIC.R
SIMAT/inst/unitTests/test_putTargetTable.R
SIMAT/inst/unitTests/test_readCDF.R
SIMAT/inst/unitTests/test_readMSL.R
SIMAT/inst/unitTests/test_writeMSL.R
SIMAT/man
SIMAT/man/Library.Rd SIMAT/man/RItable.Rd SIMAT/man/Run.Rd SIMAT/man/SIMAT-package.Rd SIMAT/man/Targets.Rd SIMAT/man/getEIC.Rd SIMAT/man/getPeak.Rd SIMAT/man/getPeakScore.Rd SIMAT/man/getRI.Rd SIMAT/man/getRIStandard.Rd SIMAT/man/getScore.Rd SIMAT/man/getTarget.Rd SIMAT/man/getTargetTable.Rd SIMAT/man/optFrag.Rd SIMAT/man/plotEIC.Rd SIMAT/man/plotTIC.Rd SIMAT/man/putTargetTable.Rd SIMAT/man/readCDF.Rd SIMAT/man/readMSL.Rd SIMAT/man/target.table.Rd SIMAT/man/writeMSL.Rd
SIMAT/tests
SIMAT/tests/runTests.R
SIMAT/vignettes
SIMAT/vignettes/SIMAT-vignette.Rnw
SIMAT/vignettes/dsPeaks.rds

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