PE: PE
In SMAD: Statistical Modelling of AP-MS Data (SMAD)
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
PE
Incorporated both spoke and matrix model.
Usage
1
PE(datInput, rBait = 0.37, cntPseudo = 1)
Arguments
datInput
A dataframe with column names: idRun, idBait, idPrey,
Each row represent one unique protein captured in one pull-down
experiment.
rBait
The value of the 'r' parameter as desribed in the publication.
cntPseudo
The value of the 'pseudo count' parameter.
Value
A dataframe consists of protein-protein interactions from both Spoke
and Matrix model.
Author(s)
Qingzhou Zhang, zqzneptune@hotmail.com
References
Collins, Sean R., et al. "Toward a comprehensive atlas of the
physical interactome of Saccharomyces cerevisiae."
Molecular & Cellular Proteomics 6.3 (2007): 439-450.
https://doi.org/10.1074/mcp.M600381-MCP200
Examples
1
2
3
data(TestDatInput)
datScore <- PE(TestDatInput, 0.37, 1)
head(datScore)
SMAD documentation built on Nov. 8, 2020, 8:24 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
PE Incorporated both spoke and matrix model.
Usage
1 | PE(datInput, rBait = 0.37, cntPseudo = 1)
|
Arguments
datInput |
A dataframe with column names: idRun, idBait, idPrey, Each row represent one unique protein captured in one pull-down experiment. |
rBait |
The value of the 'r' parameter as desribed in the publication. |
cntPseudo |
The value of the 'pseudo count' parameter. |
Value
A dataframe consists of protein-protein interactions from both Spoke and Matrix model.
Author(s)
Qingzhou Zhang, zqzneptune@hotmail.com
References
Collins, Sean R., et al. "Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae." Molecular & Cellular Proteomics 6.3 (2007): 439-450. https://doi.org/10.1074/mcp.M600381-MCP200
Examples
1 2 3 | data(TestDatInput)
datScore <- PE(TestDatInput, 0.37, 1)
head(datScore)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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