SNAGEE: Signal-to-Noise applied to Gene Expression Experiments
Version 1.16.0

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

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AuthorDavid Venet <davenet@ulb.ac.be>
Bioconductor views Microarray OneChannel QualityControl TwoChannel
Date of publicationNone
MaintainerDavid Venet <davenet@ulb.ac.be>
LicenseArtistic-2.0
Version1.16.0
URL http://bioconductor.org/
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SNAGEE")

Man pages

qualSample: Quality of samples in a study
qualStudy: Quality of a study
SNAGEE-package: Signal-to-Noise Applied to Gene Expression Experiments
toSnageeFormat: Turns an Eset into a list

Functions

SNAGEE Man page
SNAGEE-package Man page
qualSample Man page Source code
qualStudy Man page Source code
toSnageeFormat Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/SNAGEE.R
build
build/vignette.rds
inst
inst/doc
inst/doc/SNAGEE.R
inst/doc/SNAGEE.Rnw
inst/doc/SNAGEE.pdf
man
man/SNAGEE-package.Rd
man/qualSample.Rd
man/qualStudy.Rd
man/toSnageeFormat.Rd
vignettes
vignettes/SNAGEE.Rnw
SNAGEE documentation built on May 20, 2017, 9:23 p.m.