SNAGEE: Signal-to-Noise applied to Gene Expression Experiments

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SNAGEE")
AuthorDavid Venet <davenet@ulb.ac.be>
Bioconductor views Microarray OneChannel QualityControl TwoChannel
Date of publicationNone
MaintainerDavid Venet <davenet@ulb.ac.be>
LicenseArtistic-2.0
Version1.14.0
http://bioconductor.org/

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/SNAGEE.R
build
build/vignette.rds
inst
inst/doc
inst/doc/SNAGEE.R
inst/doc/SNAGEE.Rnw
inst/doc/SNAGEE.pdf
man
man/SNAGEE-package.Rd man/qualSample.Rd man/qualStudy.Rd man/toSnageeFormat.Rd
vignettes
vignettes/SNAGEE.Rnw

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