SNAGEE-package: Signal-to-Noise Applied to Gene Expression Experiments
In SNAGEE: Signal-to-Noise applied to Gene Expression Experiments

Description Details Author(s) Examples

Signal-to-Noise Applied to Gene Expression Experiments

Package:	SNAGEE
Version:	0.99.0
Date:	2012-01-26
Depends:	R (>= 2.6.0)
Imports:	SNAGEEdata
Suggests:	ALL
Enhances:	parallel
License:	Artistic-2.0
URL:	http://fleming.ulb.ac.be/SNAGEE

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qualStudy               Quality of a study
qualSample              Quality of samples in a study
toSnageeFormat          Turns an Eset to a list usable by SNAGEE

David Venet <davenet@ulb.ac.be>

Maintainer: David Venet <davenet@ulb.ac.be>

# Get the list of genes
geneList = getCC()$g;
# Create a random data set
d=list(genes=geneList, data=matrix(rnorm(length(geneList)*50),ncol=50));
# Calculate its quality (it's going to be very close to 0)
qualStudy(d, disattenuate=FALSE);
# Calcuate individual sample qualities
qs = qualSample(d);