Files in SPsimSeq

Semi-parametric simulation tool for bulk and single-cell RNA sequencing data

R/configExperiment.R R/constructDens.R R/evaluateDensities.R R/genCopula.R R/NGPscData.R R/buildXmat.R R/extractMat.R R/prepareSPsimOutputs.R R/calculateCPM.R R/genLibSizes.R R/checkInputValidity.R R/zhangData.R R/geneParmEst.R R/obtCount.R R/SPsimSeq-package.R R/estLibSizeDistr.R R/obtCorMatsBatch.R R/SPsimSeq.R R/chooseCandGenes.R R/samZeroID.R R/SPsimPerGene.R R/zeroProbModel.R R/fitPoisGlm.R R/fracZeroLogitModel.R R/selectGenes.R R/fitLLmodel.R R/matchCopula.R vignettes/SPsimSeq.Rmd man/fracZeroLogitModel.Rd man/parmEstDensVec.Rd man/SPsimSeq-package.Rd man/selectGenes.Rd man/expit.Rd man/geneParmEst.Rd man/evaluateDensities.Rd man/extractMat.Rd man/calculateCPM.Rd man/genCopula.Rd man/fitPoisGlm.Rd man/estLibSizeDistr.Rd man/genLibSizes.Rd man/SPsimPerGene.Rd man/fitLLmodel.Rd man/buildXmat.Rd man/zeroProbModel.Rd man/constructDens.Rd man/checkInputValidity.Rd man/configExperiment.Rd man/matchCopula.Rd man/zhang.data.sub.Rd man/samZeroID.Rd man/SPsimSeq.Rd man/obtCorMatsBatch.Rd man/prepareSPsimOutputs.Rd man/obtCount.Rd man/chooseCandGenes.Rd man/scNGP.data.Rd tests/testthat.R tests/testthat/test-SPsimSeq-input.R tests/testthat/test-SPsimSeq-output.R tests/testthat/test-buildXmat-output.R tests/testthat/test-configExperiment-output.R tests/testthat/test-fitPoisGlm-output.R tests/testthat/test-selectGenes-output.R inst/NEWS.md inst/NEWS.Rmd inst/doc/SPsimSeq.R inst/doc/SPsimSeq.Rmd