scNGP.data: Neuroblastoma NGP cells single-cell RNA-seq.

In SPsimSeq: Semi-parametric simulation tool for bulk and single-cell RNA sequencing data

Description

It was retrieved from [1] (GEO accession GSE119984): This dataset is generated for a cellular perturbation experiment on the C1 instrument (SMARTer protocol) [1]. This total RNA-seq dataset contains 83 NGP neuroblastoma cells, of which 31 were treated with nutlin-3 and the other 52 cells were treated with vehicle (controls).

Usage

scNGP.data

Format

A SingleCellExperiment object

Source

GEO accession GSE119984

References

1 - Verboom, K., Everaert, C., Bolduc, N., Livak, K. J., Yigit, N., Rombaut, D., ... & Speleman, F. (2019). SMARTer single cell total RNA sequencing. Nucleic Acids Research, 47(16), e93-e93.

SingleCellExperiment

counts + gene info + cell infro

Examples

data("scNGP.data")
scNGP.data

SPsimSeq documentation built on Nov. 8, 2020, 5:09 p.m.