SSPA: General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data
Version 2.16.0

General Sample size and power analysis for microarray and next-generation sequencing data.

Browse man pages Browse package API and functions Browse package files

AuthorMaarten van Iterson
Bioconductor views GeneExpression Microarray RNASeq StatisticalMethod
Date of publicationNone
MaintainerMaarten van Iterson <mviterson@gmail.com>
LicenseGPL (>= 2)
Version2.16.0
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SSPA")

Man pages

dbitri: Density function for a bi-triangular random variable.
deepSAGE: Test statistics derived from a deepSAGE experiment
Nutrigenomics: Test statistics from a Nutrigenomics gene expression...
pbitri: Distribution function for a bi-triangular random variable.
pilotData: User friendly interface to class "PilotData"
plot-methods: Methods for Function 'plot' in Package 'SSPA'
predictpower: Predict power for given vector of sample sizes
qbitri: Quantile function for a bi-triangular random variable.
rbitri: Random generation of bitriangular distributed values.
sampleSize: User friendly interface to class 'SampleSize'
show-methods: General show method for Classes PilotData and SampleSize
simdat: Generate simulated microarray data using the bitriangular...

Functions

Dn Source code
Gnhat Source code
Gntilde Source code
Hntilde Source code
Kernel Source code
Nutrigenomics Man page
Tikhonov Source code
checking Source code
cnorm Source code
congrad Source code
congradControl Source code
cornerLcurve Source code
cornerScurve Source code
ct Source code
dbitri Man page Source code
deconvControl Source code
deconvolution Source code
deepSAGE Man page
defineEffectSizeRange Source code
findroot Source code
midpoint Source code
nncg Source code
pbitri Man page Source code
picardplot Source code
pilotData Man page Source code
plot,ANY-method Man page
plot,PilotData-method Man page
plot,SampleSize-method Man page
plot-methods Man page
predictpower Man page Source code
qbitri Man page Source code
rbitri Man page Source code
regularization Source code
sampleSize Man page Source code
show,ANY-method Man page
show,PilotData-method Man page
show,SampleSize-method Man page
show-methods Man page
simdat Man page Source code
simpson Source code
standardform Source code
tikhonov Source code
tikhonovControl Source code
trapezoidal Source code
trimbin Source code
truncateEffectsize Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/DistributionClass.R
R/Ferreira.R
R/PilotDataClass.R
R/SampleSizeClass.R
R/bitriangular.R
R/conjugategradient.R
R/deconvolution.R
R/numericalintegration.R
R/powerandsamplesize.R
R/tikhonov.R
R/trimmingbinning.R
R/zzz.R
build
build/vignette.rds
data
data/Nutrigenomics.rda
data/deepSAGE.rda
inst
inst/CITATION
inst/doc
inst/doc/SSPA.R
inst/doc/SSPA.Rnw
inst/doc/SSPA.pdf
man
man/Nutrigenomics.Rd
man/dbitri.Rd
man/deepSAGE.Rd
man/pbitri.Rd
man/pilotData.Rd
man/plot-methods.Rd
man/predictpower.Rd
man/qbitri.Rd
man/rbitri.Rd
man/sampleSize.Rd
man/show-methods.Rd
man/simdat.Rd
src
src/Rinit.c
src/massdist.c
src/nncg.c
vignettes
vignettes/SSPA.Rnw
vignettes/SSPA.bib
SSPA documentation built on May 20, 2017, 10:43 p.m.