SSPA: General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data

General Sample size and power analysis for microarray and next-generation sequencing data.

Author
Maarten van Iterson
Date of publication
None
Maintainer
Maarten van Iterson <mviterson@gmail.com>
License
GPL (>= 2)
Version
2.14.0
URLs

View on Bioconductor

Man pages

dbitri
Density function for a bi-triangular random variable.
deepSAGE
Test statistics derived from a deepSAGE experiment
Nutrigenomics
Test statistics from a Nutrigenomics gene expression...
pbitri
Distribution function for a bi-triangular random variable.
pilotData
User friendly interface to class "PilotData"
plot-methods
Methods for Function 'plot' in Package 'SSPA'
predictpower
Predict power for given vector of sample sizes
qbitri
Quantile function for a bi-triangular random variable.
rbitri
Random generation of bitriangular distributed values.
sampleSize
User friendly interface to class 'SampleSize'
show-methods
General show method for Classes PilotData and SampleSize
simdat
Generate simulated microarray data using the bitriangular...

Files in this package

SSPA/DESCRIPTION
SSPA/NAMESPACE
SSPA/NEWS
SSPA/R
SSPA/R/DistributionClass.R
SSPA/R/Ferreira.R
SSPA/R/PilotDataClass.R
SSPA/R/SampleSizeClass.R
SSPA/R/bitriangular.R
SSPA/R/conjugategradient.R
SSPA/R/deconvolution.R
SSPA/R/numericalintegration.R
SSPA/R/powerandsamplesize.R
SSPA/R/tikhonov.R
SSPA/R/trimmingbinning.R
SSPA/R/zzz.R
SSPA/build
SSPA/build/vignette.rds
SSPA/data
SSPA/data/Nutrigenomics.rda
SSPA/data/deepSAGE.rda
SSPA/inst
SSPA/inst/CITATION
SSPA/inst/doc
SSPA/inst/doc/SSPA.R
SSPA/inst/doc/SSPA.Rnw
SSPA/inst/doc/SSPA.pdf
SSPA/man
SSPA/man/Nutrigenomics.Rd
SSPA/man/dbitri.Rd
SSPA/man/deepSAGE.Rd
SSPA/man/pbitri.Rd
SSPA/man/pilotData.Rd
SSPA/man/plot-methods.Rd
SSPA/man/predictpower.Rd
SSPA/man/qbitri.Rd
SSPA/man/rbitri.Rd
SSPA/man/sampleSize.Rd
SSPA/man/show-methods.Rd
SSPA/man/simdat.Rd
SSPA/src
SSPA/src/Rinit.c
SSPA/src/massdist.c
SSPA/src/nncg.c
SSPA/vignettes
SSPA/vignettes/SSPA.Rnw
SSPA/vignettes/SSPA.bib