stmFSC: Flow cytometry data to test SamSPECTRAL algorithm.

In SamSPECTRAL: Identifies cell population in flow cytometry data.

Description

This FCS file is used as demo data to illustrate SamSPECTRAL capabilities in identifying cell populations.

Usage

data(stm)

Format

The is an FCS file.

References

Zare, H. and Shooshtari, P. and Gupta, A. and Brinkman R.B: Data Reduction for Spectral Clustering to Analyse High Throughput Flow Cytometry Data. BMC Bioinformatics, 2010, 11:403.

Examples

data(stm)
   # Read data files and transform them using log transform
	data.points <- stmFSC@exprs  
	dimensions <- c(3,4,7)
	full <- log10(data.points[,dimensions])

    plot(full, pch='.')

SamSPECTRAL documentation built on Nov. 8, 2020, 5:08 p.m.