SigFuge: SigFuge

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Algorithm for testing significance of clustering in RNA-seq data.

Author
Patrick Kimes, Christopher Cabanski
Date of publication
None
Maintainer
Patrick Kimes <patrick.kimes@gmail.com>
License
GPL-3
Version
1.12.0

View on Bioconductor

Man pages

geneAnnot
CDKN2A gene locus annotation
geneDepth
Coverage matrix across CDKN2A gene locus
SFfigure
Plot expression as curves
SFlabels
Calculate SigFuge labels
SFnormalize
SigFuge normalize read counts
SFpval
Calculate SigFuge p-value
SigFuge-package
SigFuge

Files in this package

SigFuge/DESCRIPTION
SigFuge/NAMESPACE
SigFuge/R
SigFuge/R/SFfigure.R
SigFuge/R/SFlabels.R
SigFuge/R/SFnormalize.R
SigFuge/R/SFpval.R
SigFuge/build
SigFuge/build/vignette.rds
SigFuge/data
SigFuge/data/geneAnnot.rda
SigFuge/data/geneDepth.rda
SigFuge/inst
SigFuge/inst/doc
SigFuge/inst/doc/SigFuge.R
SigFuge/inst/doc/SigFuge.Rnw
SigFuge/inst/doc/SigFuge.pdf
SigFuge/man
SigFuge/man/SFfigure.Rd
SigFuge/man/SFlabels.Rd
SigFuge/man/SFnormalize.Rd
SigFuge/man/SFpval.Rd
SigFuge/man/SigFuge-package.Rd
SigFuge/man/geneAnnot.Rd
SigFuge/man/geneDepth.Rd
SigFuge/vignettes
SigFuge/vignettes/SigFuge.Rnw