geneDepth: Coverage matrix across CDKN2A gene locus
In SigFuge: SigFuge
Description
Usage
Format
Source
Description
A dataset containing read depths for 179 lung squamous cell carcinoma
samples across the CDKN2A locus.
Usage
1
Format
A 2078 x 179 data.frame of read depth (coverage). Each
column corresponds to a sample and each row to a base position along the
CDKN2A locus. These RNA-Seq read counts are a subset from 179 lung squamous
cell tumor samples sequenced as part of the Cancer Genome Atlas.
Source
The Cancer Genome Atlas Research Network. (2012)
Comprehensive genomic characterization of squamous cell
lung cancers. Nature 489: 519-525.
SigFuge documentation built on Nov. 8, 2020, 6:17 p.m.
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Description Usage Format Source
Description
A dataset containing read depths for 179 lung squamous cell carcinoma samples across the CDKN2A locus.
Usage
1 |
Format
A 2078 x 179 data.frame of read depth (coverage). Each
column corresponds to a sample and each row to a base position along the
CDKN2A locus. These RNA-Seq read counts are a subset from 179 lung squamous
cell tumor samples sequenced as part of the Cancer Genome Atlas.
Source
The Cancer Genome Atlas Research Network. (2012) Comprehensive genomic characterization of squamous cell lung cancers. Nature 489: 519-525.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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