geneDepth: Coverage matrix across CDKN2A gene locus

Description Usage Format Source


A dataset containing read depths for 179 lung squamous cell carcinoma samples across the CDKN2A locus.




A 2078 x 179 data.frame of read depth (coverage). Each column corresponds to a sample and each row to a base position along the CDKN2A locus. These RNA-Seq read counts are a subset from 179 lung squamous cell tumor samples sequenced as part of the Cancer Genome Atlas.


The Cancer Genome Atlas Research Network. (2012) Comprehensive genomic characterization of squamous cell lung cancers. Nature 489: 519-525.

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