LRscore: Calculation of the LRscore
In SingleCellSignalR: Cell Signalling Using Single Cell RNAseq Data Analysis
Description
Usage
Arguments
Value
Examples
View source: R/cell_signaling.R
Description
Calculation of the LRscore
Usage
1
LRscore(l, r, s)
Arguments
l
a value (or a vector) of the mean ligand expression in the
secreting cluster
r
a value (or a vector) of the mean receptor expression in the
receiving cluster
s
a value for scaling the score (usually the mean of the whole
read count table, the median or another similar value is possible),
must be over 0
Value
a value or a vector
Examples
1
2
3
4
l=1
r=9
s=5
LRscore(l,r,s)
Example output
[1] 0.375
SingleCellSignalR documentation built on Nov. 8, 2020, 5:17 p.m.
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Description Usage Arguments Value Examples
View source: R/cell_signaling.R
Description
Calculation of the LRscore
Usage
1 | LRscore(l, r, s)
|
Arguments
l |
a value (or a vector) of the mean ligand expression in the secreting cluster |
r |
a value (or a vector) of the mean receptor expression in the receiving cluster |
s |
a value for scaling the score (usually the mean of the whole read count table, the median or another similar value is possible), must be over 0 |
Value
a value or a vector
Examples
1 2 3 4 | l=1
r=9
s=5
LRscore(l,r,s)
|
Example output
[1] 0.375
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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