SingleR: Reference-Based Single-Cell RNA-Seq Annotation

Performs unbiased cell type recognition from single-cell RNA sequencing data, by leveraging reference transcriptomic datasets of pure cell types to infer the cell of origin of each single cell independently.

Package details

AuthorDvir Aran [aut, cph], Aaron Lun [ctb, cre], Daniel Bunis [ctb], Jared Andrews [ctb], Friederike Dündar [ctb]
Bioconductor views Annotation Classification Clustering GeneExpression SingleCell Software Transcriptomics
MaintainerAaron Lun <[email protected]>
LicenseGPL-3 + file LICENSE
Version1.0.5
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SingleR")

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SingleR documentation built on Jan. 9, 2020, 2:01 a.m.