Files in SingleR

Reference-Based Single-Cell RNA-Seq Annotation

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/getDeltaFromMedian.R R/mockData.R R/datasets.R R/trainSingleR.R R/aggregateReference.R R/classifySingleR.R R/plotScoreDistribution.R R/plotScoreHeatmap.R R/matchReferences.R R/combineRecomputedResults.R R/pruneScores.R R/plotDeltaDistribution.R R/getClassicMarkers.R R/SingleR.R R/combineCommonResults.R R/fine_tune.R R/utils.R

src/compute_scores.h

src/fine_tune_de.cpp

src/RcppExports.cpp

src/recompute_scores.cpp

src/fine_tuner.h

src/fine_tune_sd.cpp

src/scaled_ranks.h

inst/NEWS.Rd

inst/CITATION

inst/doc/SingleR.Rmd

inst/doc/SingleR.html

inst/doc/SingleR.R

build/vignette.rds

tests/testthat.R tests/testthat/test-score-dist.R tests/testthat/test-aggregate.R tests/testthat/test-markers.R tests/testthat/test-combine.R tests/testthat/test-recomputed.R tests/testthat/test-classify.R tests/testthat/test-heatmap.R tests/testthat/test-prune.R tests/testthat/setup.R tests/testthat/test-fine-tune.R tests/testthat/test-SingleR.R tests/testthat/test-train.R

vignettes/ref.bib

vignettes/SingleR.Rmd man/aggregateReference.Rd man/pruneScores.Rd man/SingleR.Rd man/trainSingleR.Rd man/getDeltaFromMedian.Rd man/getClassicMarkers.Rd man/classifySingleR.Rd man/combineCommonResults.Rd man/datasets.Rd man/combineRecomputedResults.Rd man/plotScoreHeatmap.Rd man/matchReferences.Rd man/mockData.Rd man/plotScoreDistribution.Rd man/plotDeltaDistribution.Rd

SingleR documentation built on Feb. 4, 2021, 2:01 a.m.