API for SingleR
Reference-Based Single-Cell RNA-Seq Annotation
| Global functions | |
|---|---|
| .build_trained_index | Source code |
| .classify_internals | Source code |
| .combine_result_frames | Source code |
| .convert_per_label_set | Source code |
| .create_label_origin | Source code |
| .ensure_named | Source code |
| .find_nearest_quantile | Source code |
| .fine_tune_de | Source code |
| .fine_tune_de0 | Source code |
| .fine_tune_sd | Source code |
| .fine_tune_sd0 | Source code |
| .get_genes_by_de | Source code |
| .get_genes_by_sd | Source code |
| .get_levels | Source code |
| .identify_genes | Source code |
| .is_data_frame | Source code |
| .is_list | Source code |
| .make_annotation_col | Source code |
| .make_heatmap_annotation_colors | Source code |
| .make_heatmap_colors_discrete | Source code |
| .make_heatmap_colors_numeric | Source code |
| .median_by_label | Source code |
| .mockRefData | Man page Source code |
| .mockTestData | Man page Source code |
| .name_unless_NULL | Source code |
| .nonred_recompute_scores | Source code |
| .order_score_matrix | Source code |
| .pick_colors_for_df | Source code |
| .plot_delta_distribution | Source code |
| .plot_score_distribution | Source code |
| .plot_score_heatmap | Source code |
| .pretty_violins | Source code |
| .realize_references | Source code |
| .scaled_colranks_safe | Source code |
| .to_clean_matrix | Source code |
| .trim_byLabel_and_normalize_scores | Source code |
| .trim_normalize_reorder_scores | Source code |
| .validate_de_gene_set | Source code |
| .values_title | Source code |
| BlueprintEncodeData | Man page Source code |
| DatabaseImmuneCellExpressionData | Man page Source code |
| HumanPrimaryCellAtlasData | Man page Source code |
| ImmGenData | Man page Source code |
| MonacoImmuneData | Man page Source code |
| MouseRNAseqData | Man page Source code |
| NovershternHematopoieticData | Man page Source code |
| SingleR | Man page Source code |
| aggregateReference | Man page Source code |
| classifySingleR | Man page Source code |
| combineCommonResults | Man page Source code |
| combineRecomputedResults | Man page Source code |
| datasets | Man page |
| fine_tune_label_de | Source code |
| fine_tune_label_sd | Source code |
| getClassicMarkers | Man page Source code |
| getDeltaFromMedian | Man page Source code |
| matchReferences | Man page Source code |
| plotDeltaDistribution | Man page Source code |
| plotScoreDistribution | Man page Source code |
| plotScoreHeatmap | Man page Source code |
| pruneScores | Man page Source code |
| recompute_scores | Source code |
| trainSingleR | Man page Source code |
