Files in SummarizedBenchmark

Classes and methods for performing benchmark comparisons

README.Rmd README.md R/data-quant.R R/SummarizedBenckmark-accessors.R R/BDMethodList-show.R R/data-tdat.R R/PlottingFunctions.R R/BDMethod-tidy.R R/expandMethod.R R/BDMethod-constructor.R R/BDData-show.R R/AllGenerics.R R/data-soneson2016.R R/addMethod.R R/printUpdateBench.R R/SummarizedBenckmark-constructor.R R/BDMethod-show.R R/updateBench.R R/dropMethod.R R/modifyMethod.R R/BenchDesign-show.R R/compareBenchDesigns.R R/printMethod.R R/AllClasses.R R/BenchDesign-constructor.R R/BenchDesign-accessors.R R/BDMethodList-accessors.R R/BDMethodList-constructor.R R/DefaultMetrics.R R/PerformanceMetrics.R R/BDData-constructor.R R/buildBench.R vignettes/SummarizedBenchmark-ClassDetails.Rmd vignettes/Feature-Iterative.Rmd vignettes/Feature-ErrorHandling.Rmd vignettes/CaseStudy-RNAseqQuantification.Rmd vignettes/CaseStudy-SingleCellSimulation.Rmd vignettes/Feature-Parallel.Rmd vignettes/SummarizedBenchmark-Introduction.Rmd vignettes/SummarizedBenchmark-FullCaseStudy.Rmd man/tidyUpMetrics.Rd man/sb.Rd man/performanceMetrics.Rd man/mcols-setter.Rd man/addPerformanceMetric.Rd man/BDMethod.Rd man/performanceMetrics-setter.Rd man/compareBDData.Rd man/BDMethod-setter.Rd man/BenchDesign-class.Rd man/printMethod.Rd man/groundTruths.Rd man/modmethod.Rd man/BDMethodList-setter.Rd man/buildBench.Rd man/tdat.Rd man/dropMethod.Rd man/compareBDMethod.Rd man/BDMethod-show.Rd man/expandMethod.Rd man/SummarizedBenchmark.Rd man/BDData-show.Rd man/SummarizedBenchmark-class.Rd man/BDMethodList.Rd man/hashBDData.Rd man/BenchDesign.Rd man/BDMethodList-class.Rd man/compareBenchDesigns.Rd man/plotMethodsOverlap.Rd man/BenchDesign-show.Rd man/BDMethod-class.Rd man/BDData-setter.Rd man/allSB.Rd man/BDMethodList-show.Rd man/tidyBDMethod.Rd man/updateBench.Rd man/BDData.Rd man/modifyMethod.Rd man/BDData-class.Rd man/availableMetrics.Rd man/assayNames-setter.Rd man/groundTruths-setter.Rd man/estimateMetrics.Rd man/addMethod.Rd man/plotROC.Rd tests/testthat.R tests/testthat/test-buildBench.R tests/testthat/test_estimatePerformanceMetrics.R tests/testthat/test-BenchDesign.R tests/testthat/test_addPerformanceFunction.R tests/testthat/test-BDMethod.R tests/testthat/test_metricsRerun.R tests/testthat/test_SummarizedBenchmark.R tests/testthat/test_plottingFunctions.R tests/testthat/test-updateBench.R inst/doc/SummarizedBenchmark-ClassDetails.Rmd inst/doc/SummarizedBenchmark-Introduction.R inst/doc/CaseStudy-SingleCellSimulation.R inst/doc/Feature-Iterative.Rmd inst/doc/Feature-Iterative.R inst/doc/SummarizedBenchmark-ClassDetails.R inst/doc/Feature-ErrorHandling.Rmd inst/doc/CaseStudy-RNAseqQuantification.Rmd inst/doc/CaseStudy-SingleCellSimulation.Rmd inst/doc/Feature-Parallel.R inst/doc/Feature-Parallel.Rmd inst/doc/CaseStudy-RNAseqQuantification.R inst/doc/SummarizedBenchmark-Introduction.Rmd inst/doc/Feature-ErrorHandling.R inst/doc/SummarizedBenchmark-FullCaseStudy.Rmd inst/doc/SummarizedBenchmark-FullCaseStudy.R