Man pages for SummarizedBenchmark
Classes and methods for performing benchmark comparisons

addMethodAdd method to BenchDesign object
addPerformanceMetricAdd performance metric to SummarizedBenchmark object
allSBSummarizedBenchmark object of isoform quantification results
assayNames-setterSet assay names in SummarizedBenchmark object
availableMetricsList pre-defined metrics for SummarizedBenchmark objects
BDDataCreate a new BDData object
BDData-classBDData class
BDData-setterSet data in BenchDesign object
BDData-showShow BDData object
BDMethodCreate a new BDMethod object
BDMethod-classBDMethod class
BDMethodListCreate a new BDMethodList object
BDMethodList-classBDMethodList class
BDMethodList-setterSet method list in BenchDesign object
BDMethodList-showShow BDMethodList object
BDMethod-setterSet method in list or BenchDesign object
BDMethod-showShow BDMethod object
BenchDesignCreate a new BenchDesign object
BenchDesign-classBenchDesign class
BenchDesign-showShow BenchDesign object
buildBenchExecute BenchDesign
compareBDDataCompare BDData objects
compareBDMethodCompare BDMethod objects
compareBenchDesignsCompare BenchDesign objects
dropMethodRemove method from BenchDesign object
estimateMetricsEstimate performance metrics in SummarizedBenchmark object
expandMethodExpand method in BenchDesign object
groundTruthsGet ground truths in SummarizedBenchmark object
groundTruths-setterSet ground truths in SummarizedBenchmark object
hashBDDataHash data in BDData object
mcols-setterSet meta data columns in SummarizedBenchmark object
modifyMethodModify method in BenchDesign object
modmethodModify BenchDesign Method
performanceMetricsGet performance metrics in SummarizedBenchmark object
performanceMetrics-setterSet performance metrics in SummarizedBenchmark object
plotMethodsOverlapPlot UpSetR for SummarizedBenchmark object
plotROCPlot ROC curve for SummarizedBenchmark object
printMethodPretty print methods in a BenchDesign object
sbSummarizedBenchmark example
SummarizedBenchmarkCreate a new SummarizedBenchmark object
SummarizedBenchmark-classSummarizedBenchmark class
tdatExample data.frame containing results for 50 two-sample...
tidyBDMethodTidy BDMethod Data
tidyUpMetricsTidy up performance metrics in SummarizedBenchmark object
updateBenchCheck/Update SummarizedBenchmark
SummarizedBenchmark documentation built on Nov. 8, 2020, 8:30 p.m.