NullFilter-class: Create a NullFilter object

In TReNA: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Description

A NullFilter object allows for "filtering" of the genes in an assay matrix. Its associated getCandidates method returns the list of transcription factors included in the assay matrix.

Usage

NullFilter(mtx.assay = matrix(), quiet = TRUE)

Arguments

mtx.assay	An assay matrix of gene expression data
quiet	A logical denoting whether or not the filter should print output

Value

A CandidateFilter class object with null as the filtering method

An object of the NullFilter class

See Also

getCandidates-NullFilter, getFilterAssayData

Other Filtering Objects: FootprintFilter-class, VarianceFilter-class

Examples

load(system.file(package="TReNA", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
null.filter <- NullFilter(mtx.assay = mtx.sub)

TReNA documentation built on Nov. 17, 2017, 12:35 p.m.