Two-Tier Mapper: a clustering tool based on topological data analysis

calcul_e | Calculation of the value of epsilon |

control_adjustment | Calculates a corrected control group, discovers outliers in... |

generate_correlation | Generates different distance matrices |

hyperrectangle_deviation_assessment | Calculation of deviation components |

make_matrices | Prepares the matrices for 'control_adjustment' |

make_matrices-methods | Prepares the matrices for 'control_adjustment' |

ttmap | Visualisation of the clustering |

TTMap-package | Two-Tier Mapper: a clustering tool based on topological data... |

ttmap_sgn_genes | Gives a list of associated genes per cluster |

write_pcl | Reading, writing and annotation files |

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