Files in TitanCNA

Subclonal copy number and LOH prediction from whole genome sequencing of tumours

README.md

.Rinstignore

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/titan.h

src/fwd_backC_clonalCN.c

src/viterbiC_clonalCN.c

src/getPositionOverlapC.c

src/register.c

data/datalist

data/EMresults.rda

R/correction.R R/haplotype.R R/utils.R R/hmmClonal.R R/plotting.R R/zzz.R R/paramEstimation.R

vignettes/TitanCNA.bib

vignettes/TitanCNA.Rnw

man/TitanCNA-output.Rd man/viterbiClonalCN.Rd man/computeSDbwIndex.Rd man/loadDefaultParameters.Rd man/correctCN.Rd man/TitanCNA-plotting.Rd man/TitanCNA-package.Rd man/correctReadDepth.Rd man/loadAlleleCounts.Rd man/getPositionOverlap.Rd man/haplotype.Rd man/runEMclonalCN.Rd man/wigImport.Rd man/filterData.Rd man/TitanCNA-dataset.Rd

inst/CITATION

inst/doc/TitanCNA.pdf

inst/doc/TitanCNA.Rnw

inst/doc/TitanCNA.R

inst/extdata/Seqinfo_hg19.rda

inst/extdata/test_alleleCounts_chr2.txt

inst/extdata/map_chr2.wig

inst/extdata/gc_chr2.wig

inst/extdata/test_tum_chr2.wig

inst/extdata/test_norm_chr2.wig

TitanCNA documentation built on Nov. 8, 2020, 8:14 p.m.