Files in TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours

NEWS
.Rinstignore
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/TitanCNA.Rnw
inst/doc/TitanCNA.R inst/doc/TitanCNA.pdf
inst/extdata/test_alleleCounts_chr2.txt
inst/extdata/gc_chr2.wig
inst/extdata/test_norm_chr2.wig
inst/extdata/map_chr2.wig
inst/extdata/test_tum_chr2.wig
inst/extdata/Seqinfo_hg19.rda
vignettes/TitanCNA.Rnw
vignettes/TitanCNA.bib
R/haplotype.R R/zzz.R R/plotting.R R/utils.R R/correction.R R/paramEstimation.R R/hmmClonal.R
src/getPositionOverlapC.c
src/viterbiC_clonalCN.c
src/titan.h
src/fwd_backC_clonalCN.c
src/register.c
man/filterData.Rd man/wigToRangedData.Rd man/computeSDbwIndex.Rd man/getPositionOverlap.Rd man/extractAlleleReadCounts.Rd man/haplotype.Rd man/viterbiClonalCN.Rd man/runEMclonalCN.Rd man/loadAlleleCounts.Rd man/correctReadDepth.Rd man/TitanCNA-output.Rd man/loadDefaultParameters.Rd man/TitanCNA-dataset.Rd man/TitanCNA-package.Rd man/TitanCNA-plotting.Rd
build/vignette.rds
data/EMresults.rda
data/datalist
TitanCNA documentation built on May 2, 2018, 3:33 a.m.