Files in TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours

.Rinstignore
DESCRIPTION
NAMESPACE
NEWS
README.md
build/vignette.rds
src/fwd_backC_clonalCN.c
src/titan.h
src/register.c
src/viterbiC_clonalCN.c
src/getPositionOverlapC.c
inst/CITATION
inst/doc/TitanCNA.R
inst/doc/TitanCNA.Rnw
inst/doc/TitanCNA.pdf
inst/extdata/Seqinfo_hg19.rda
inst/extdata/test_tum_chr2.wig
inst/extdata/test_alleleCounts_chr2.txt
inst/extdata/gc_chr2.wig
inst/extdata/test_norm_chr2.wig
inst/extdata/map_chr2.wig
vignettes/TitanCNA.Rnw
vignettes/TitanCNA.bib
man/extractAlleleReadCounts.Rd man/loadDefaultParameters.Rd man/computeSDbwIndex.Rd man/TitanCNA-output.Rd man/getPositionOverlap.Rd man/wigToRangedData.Rd man/haplotype.Rd man/correctReadDepth.Rd man/TitanCNA-plotting.Rd man/loadAlleleCounts.Rd man/TitanCNA-package.Rd man/filterData.Rd man/TitanCNA-dataset.Rd man/viterbiClonalCN.Rd man/runEMclonalCN.Rd
data/EMresults.rda
data/datalist
R/utils.R R/hmmClonal.R R/paramEstimation.R R/correction.R R/plotting.R R/haplotype.R R/zzz.R
TitanCNA documentation built on Nov. 17, 2017, 11:20 a.m.