Man pages for TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours

computeSDbwIndexCompute the S_Dbw Validity Index for 'TitanCNA' model...
correctReadDepthCorrect GC content and mappability biases in sequencing data...
extractAlleleReadCountsFunction to extract allele read counts from a sequence...
filterDataFilter list object based on read depth and missing data and...
getPositionOverlapFunction to assign values to given chromosome-position that...
haplotypeFunction to load tumour allele counts from a text file or...
loadAlleleCountsFunction to load tumour allele counts from a text file or...
loadDefaultParametersLoad TITAN parameters
runEMclonalCNFunction to run the Expectation Maximization Algorithm in...
TitanCNA-datasetTITAN EM trained results for an example dataset
TitanCNA-outputFormatting and printing 'TitanCNA' results.
TitanCNA-packageTITAN: Subclonal copy number and LOH prediction whole genome...
TitanCNA-plottingPlotting functions for 'TitanCNA' results.
viterbiClonalCNFunction to run the Viterbi algorithm for 'TitanCNA'.
wigToRangedDataWIG Import Functions
TitanCNA documentation built on May 2, 2018, 3:33 a.m.