API for ToxicoGx
Analysis of Large-Scale Toxico-Genomic Data

Global functions
.Hill	Source code
.ToxicoSet	Man page
.calculateFromRaw	Source code
.checkParamsForErrors	Source code
.checkParamsForMissing	Source code
.checkParamsForMissingTests	Source code
.computeAUCUnderFittedCurve	Source code
.convertTsetMolecularProfilesToSE	Source code
.createtSetEntry	Source code
.eSetToSE	Source code
.getCommonConcentrationRange	Source code
.meshEval	Source code
.onAttach	Source code
.optimizeRegression	Source code
.residual	Source code
.summarizePerturbationNumbers	Source code
.summarizeSensitivityNumbers	Source code
HCC_sig	Man page
TGGATESsmall	Man page
ToxicoSet	Man page Source code
ToxicoSet-class	Man page
ToxicoSig	Man page Source code
[,ToxicoSet,ANY,ANY,ANY-method	Man page
annotation	Man page
annotation,ToxicoSet-method	Man page
annotation<-	Man page
annotation<-,ToxicoSet,list-method	Man page
availableTSets	Man page Source code
cellInfo,ToxicoSet-method	Man page
cellInfo<-,ToxicoSet,data.frame-method	Man page
cellNames,ToxicoSet-method	Man page
cellNames<-,ToxicoSet,character-method	Man page
checkTSetStructure	Man page Source code
columnsAsCharacter	Source code
computeAUC	Man page
computeIC50	Man page Source code
computeICn	Man page Source code
computeLimmaDiffExpr	Man page
computeLimmaDiffExpr,ToxicoSet-method	Man page
curation	Man page
curation,ToxicoSet-method	Man page
curation<-	Man page
curation<-,ToxicoSet,list-method	Man page
datasetType	Man page
datasetType,ToxicoSet-method	Man page
datasetType<-	Man page
datasetType<-,ToxicoSet-method	Man page
dateCreated,ToxicoSet-method	Man page
dim,ToxicoSet-method	Man page
downloadTSet	Man page Source code
drugGeneResponseCurve	Man page Source code
drugInfo	Man page
drugInfo,ToxicoSet-method	Man page
drugInfo<-	Man page
drugInfo<-,ToxicoSet,data.frame-method	Man page
drugNames	Man page
drugNames,ToxicoSet-method	Man page
drugNames<-	Man page
drugNames<-,ToxicoSet,character-method	Man page
drugPerturbationSig	Man page Source code
drugTimeResponseCurve	Man page Source code
fNames,ToxicoSet,character-method	Man page
fNames<-,ToxicoSet,character,ANY-method	Man page
featureInfo,ToxicoSet,character-method	Man page
featureInfo<-,ToxicoSet,character,data.frame-method	Man page
geneDrugPerturbation	Man page Source code
geneDrugSensitivity	Source code
logLogisticRegression	Man page Source code
mDataNames,ToxicoSet-method	Man page
molecularProfiles,ToxicoSet-method	Man page
molecularProfiles<-,ToxicoSet,character,character,matrix-method	Man page
molecularProfiles<-,ToxicoSet,character,missing,matrix-method	Man page
molecularProfilesSlot,ToxicoSet-method	Man page
molecularProfilesSlot<-,ToxicoSet,ANY-method	Man page
name,ToxicoSet-method	Man page
paramErrorChecker	Source code
paramMissingHandler	Source code
paramMissingHandlerTests	Source code
pertNumber,ToxicoSet-method	Man page
pertNumber<-,ToxicoSet,array-method	Man page
phenoInfo,ToxicoSet,character-method	Man page
phenoInfo<-,ToxicoSet,character,data.frame-method	Man page
rankGeneDrugPerturbation	Source code
sanitizeInput	Source code
sensNumber,ToxicoSet-method	Man page
sensNumber<-,ToxicoSet,matrix-method	Man page
sensitivityInfo,ToxicoSet-method	Man page
sensitivityInfo<-,ToxicoSet,data.frame-method	Man page
sensitivityMeasures,ToxicoSet-method	Man page
sensitivityProfiles,ToxicoSet-method	Man page
sensitivityProfiles<-,ToxicoSet,data.frame-method	Man page
sensitivityProfiles<-,ToxicoSet,matrix-method	Man page
sensitivityRaw	Man page
sensitivityRaw,ToxicoSet-method	Man page
sensitivityRaw<-	Man page
sensitivityRaw<-,ToxicoSet,array-method	Man page
sensitivitySlot	Man page
sensitivitySlot,ToxicoSet-method	Man page
sensitivitySlot<-	Man page
sensitivitySlot<-,ToxicoSet,list-method	Man page
show,ToxicoSet-method	Man page
show,ToxicoSig-method	Man page
showSigAnnot	Man page Source code
subsetTo	Man page Source code
summarizeMolecularProfiles	Man page Source code
summarizeSensitivityProfiles	Man page Source code
updateCellId	Man page Source code
updateDrugId	Man page Source code
updateMaxConc	Source code