computeLimmaDiffExpr-ToxicoSet-method: Conduct differential expression analysis using the limma R...
In ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data
Description
Usage
Arguments
Value
Examples
Description
WARNING: This function can take a very long time to compute!
Usage
1
2
## S4 method for signature 'ToxicoSet'
computeLimmaDiffExpr(object, buildTable = TRUE)
Arguments
object
A [‘ToxicoSet'] object with a molecular profile named ’rna'
buildTable
['logical'] Should the result of the eBayes function
from limma be assembled into a data.table containing the result along
with the gene, compound and durations names. Default it TRUE, otherwise
this function with return the object produced by eBayes.
Value
A ['data.table'] containing the results the limma differential
expression analysis comparing control vs each dose level for each compound
within each duration.
Examples
1
2
3
4
if (interactive()) {
data(TGGATESsmall)
analysis <- computeLimmaDiffExpr(TGGATESsmall)
}
ToxicoGx documentation built on Nov. 19, 2020, 2 a.m.
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Description Usage Arguments Value Examples
Description
WARNING: This function can take a very long time to compute!
Usage
1 2 | ## S4 method for signature 'ToxicoSet'
computeLimmaDiffExpr(object, buildTable = TRUE)
|
Arguments
object |
A [‘ToxicoSet'] object with a molecular profile named ’rna' |
buildTable |
['logical'] Should the result of the eBayes function from limma be assembled into a data.table containing the result along with the gene, compound and durations names. Default it TRUE, otherwise this function with return the object produced by eBayes. |
Value
A ['data.table'] containing the results the limma differential expression analysis comparing control vs each dose level for each compound within each duration.
Examples
1 2 3 4 | if (interactive()) {
data(TGGATESsmall)
analysis <- computeLimmaDiffExpr(TGGATESsmall)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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