Description Column descriptions Author(s) See Also
Description of the SIFT Sqlite Database Columns
These column names are displayed when columns
is called on a
SIFTDb
object.
RSID : rsid
PROTEINID : NCBI RefSeq protein ID
AACHANGE : amino acid substitution; reference aa is preceeding, followed by the position and finally the snp aa
METHOD : method of obtaining related sequences using PSI-BLAST
AA : either the reference or snp residue amino acid
PREDICTION : SIFT prediction
SCORE : SIFT score (range 0 to 1)
TOLERATED : score is greater than 0.05
DAMAGING : score is less than or equal to 0.05
NOT SCORED : no prediction is made if there are less than 2 homologous sequences that have an amino acid at the position of the given SNP or if the SIFT prediction is not available
MEDIAN : diversity measurement of the sequences used for prediction (range 0 to 4.32)
POSITIONSEQS : number of sequences with an amino acide at the position of prediction
TOTALSEQS : total number of sequences in alignment
Valerie Obenchain
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