seqinfo-method: Get seqinfo for VCF file
In VariantAnnotation: Annotation of Genetic Variants
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Get seqinfo for VCF file
Usage
1
2
3
4
Arguments
x
Either character(), VcfFile, or VcfFileList
Details
If a VcfFileThe file header is scanned an appropriate seqinfo
object in given. If a VcfFileList is given, all file headers are
scanned, and appropriate combined seqinfo object is given.
Value
Seqinfo object
Author(s)
Lori Shepherd
See Also
Examples
1
2
3
4
fl <- system.file("extdata", "chr7-sub.vcf.gz", package="VariantAnnotation",
mustWork=TRUE)
vcf <- VcfFile(fl)
seqinfo(vcf)
VariantAnnotation documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Get seqinfo for VCF file
Usage
1 2 3 4 |
Arguments
x |
Either character(), |
Details
If a VcfFileThe file header is scanned an appropriate seqinfo
object in given. If a VcfFileList is given, all file headers are
scanned, and appropriate combined seqinfo object is given.
Value
Seqinfo object
Author(s)
Lori Shepherd
See Also
Examples
1 2 3 4 | fl <- system.file("extdata", "chr7-sub.vcf.gz", package="VariantAnnotation",
mustWork=TRUE)
vcf <- VcfFile(fl)
seqinfo(vcf)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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