Man pages for VariantTools
Tools for Exploratory Analysis of Variant Calls
| annnotateWithControlDepth | Annotate Case with Control Depth |
| callGenotypes | Call Genotypes |
| callSampleSpecificVariants | Call Sample-Specific Variants |
| callVariants | Call Variants |
| callWildtype | Calling Wildtype |
| concordance | Variant Concordance |
| extractCoverageForPositions | Get Coverage at Positions |
| FilterConstructors | Variant Filter Constructors |
| matchVariants | Match variants by position and allele |
| pileupVariants | Nucleotide pileup from alignments |
| postFilterVariants | Post-filtering of Variants |
| qaVariants | QA Filtering of Variants |
| tallyVariants | Tally the positions in a BAM file |
| variantGR2Vcf | Create a VCF for some variants |
| vignette | Vignette Data |
