API for aCGH
Classes and functions for Array Comparative Genomic Hybridization data
| Global functions | |
|---|---|
| [.aCGH | Man page |
| aCGH | Man page |
| aCGH.process | Man page Source code |
| aCGH.read.Sprocs | Man page Source code |
| aCGH.test | Man page Source code |
| as.eSet | Man page |
| as.matrix.dist | Man page |
| changeProp.func | Man page Source code |
| changeProp.overall.func | Man page Source code |
| clone.names | Man page |
| clone.names<- | Man page |
| clones.info | Man page Source code |
| clones.info.ex | Man page |
| clusterGenome | Man page Source code |
| col.names.aCGH | Man page |
| col.names<-.aCGH | Man page |
| colnames.aCGH | Man page |
| colnames<-.aCGH | Man page |
| colorectal | Man page |
| combine.func | Man page Source code |
| computeSD.Samples | Man page Source code |
| computeSD.func | Man page Source code |
| corna | Man page Source code |
| create.aCGH | Man page Source code |
| create.resT | Man page Source code |
| dim.aCGH | Man page Source code |
| dotify.names | Man page Source code |
| ex.acgh.hmm | Man page Man page Man page |
| extract.clones.info | Man page Source code |
| fga.func | Man page Source code |
| find.genomic.events | Man page Source code |
| find.hmm.states | Man page Source code |
| findAber.func | Man page Source code |
| findAmplif.func | Man page Source code |
| findOutliers.func | Man page Source code |
| findTrans.func | Man page Source code |
| floorFunc | Man page Source code |
| gainLoss | Man page |
| genomic.events | Man page Source code |
| genomic.events<- | Man page |
| heatmap | Man page Source code |
| hmm | Man page Source code |
| hmm.merged | Man page Source code |
| hmm.merged<- | Man page |
| hmm.run.func | Man page Source code |
| hmm<- | Man page |
| human.chrom.info.Jul03 | Man page |
| human.chrom.info.May04 | Man page |
| impute.HMM | Man page Man page Source code |
| impute.lowess | Man page Source code |
| is.aCGH | Man page Source code |
| is.even | Man page Source code |
| is.odd | Man page Source code |
| lengthGain.na | Man page Source code |
| lengthLoss.na | Man page Source code |
| lengthNumFunc | Man page Source code |
| log2.ratios | Man page Source code |
| log2.ratios.ex | Man page |
| log2.ratios.imputed | Man page Source code |
| log2.ratios.imputed<- | Man page |
| maPalette | Man page |
| maxdiff.func | Man page Source code |
| maxna | Man page Source code |
| mergeFunc | Man page Source code |
| mergeHmmStates | Man page Source code |
| mergeLevels | Man page Source code |
| mincorr.func | Man page Source code |
| minna | Man page Source code |
| mt.maxT | Man page |
| mt.minP | Man page |
| ncol.aCGH | Man page Source code |
| nrow.aCGH | Man page Source code |
| num.chromosomes | Man page Source code |
| num.clones | Man page |
| num.samples | Man page |
| pheno.type.ex | Man page |
| phenotype | Man page Source code |
| phenotype<- | Man page |
| plot.aCGH | Man page Source code |
| plotCGH.func | Man page |
| plotCGH.hmm.func | Man page |
| plotChrom | Man page Source code |
| plotChrom.grey.samples.func | Man page Source code |
| plotChrom.hmm.func | Man page Source code |
| plotChrom.samples.func | Man page Source code |
| plotFreqGivenStat | Man page |
| plotFreqStat | Man page Source code |
| plotFreqStatColors | Man page Source code |
| plotFreqStatGrey | Man page Source code |
| plotGene | Man page Source code |
| plotGeneSign | Man page Source code |
| plotGenome | Man page Source code |
| plotHmmStates | Man page Source code |
| plotHmmStatesNew | Man page Source code |
| plotSummaryProfile | Man page Source code |
| plotValChrom | Man page Source code |
| plotValGenome | Man page Source code |
| plotfreq.givenstat.final.colors.func | Man page Source code |
| plotfreq.stat.chrom.final.func | Man page Source code |
| plotfreq.stat.final.func | Man page Source code |
| plotfreqGivenStatFinalColors | Man page |
| plotvalChrom.func | Man page Source code |
| print.aCGH | Man page Source code |
| prop.na | Man page Source code |
| propGain.na | Man page Source code |
| propLoss.na | Man page Source code |
| propNumFunc | Man page Source code |
| read.Sproc.files | Man page Source code |
| row.names.aCGH | Man page |
| row.names<-.aCGH | Man page |
| rownames.aCGH | Man page Source code |
| rownames<-.aCGH | Man page |
| sample.names | Man page Source code |
| sample.names<- | Man page |
| sd.samples | Man page Source code |
| sd.samples<- | Man page |
| smoothData.func | Man page |
| states.hmm.func | Man page Source code |
| subset.hmm | Man page Source code |
| subset.hmm.merged | Man page Source code |
| summarize.clones | Man page Source code |
| summary.aCGH | Man page Source code |
| table.bac.func | Man page Source code |
| threshold.func | Man page Man page Source code |
| thresholdData.func | Man page |
