affyQCReport: QC Report Generation for affyBatch objects

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author
Craig Parman <craig.parman@bifx.org>, Conrad Halling <conrad.halling@bifx.org>, Robert Gentleman
Date of publication
None
Maintainer
Craig Parman <craig.parman@bifx.org>
License
LGPL (>= 2)
Version
1.52.0

View on Bioconductor

Man pages

affyQAReport
Generate a QA Report for Affymetrix arrays
borderQC1
Distribution of intensities of the border elements
borderQC2
Center of intensity QC plots
correlationPlot
Array-array intensity correlation plot
QCReport
QC Report for AffyBatch objects
signalDist
Intensity distribution plots for a AffyBatch object
titlePage
QC report title page with array names

Files in this package

affyQCReport/DESCRIPTION
affyQCReport/NAMESPACE
affyQCReport/R
affyQCReport/R/affyQAReport.R
affyQCReport/R/arrayReport.R
affyQCReport/R/border1.R
affyQCReport/R/border2.R
affyQCReport/R/correlation.R
affyQCReport/R/signaldist.R
affyQCReport/R/titlepage.R
affyQCReport/build
affyQCReport/build/vignette.rds
affyQCReport/inst
affyQCReport/inst/Templates
affyQCReport/inst/Templates/affyQAtemplate.tex
affyQCReport/inst/doc
affyQCReport/inst/doc/affyQCReport.R
affyQCReport/inst/doc/affyQCReport.Rnw
affyQCReport/inst/doc/affyQCReport.pdf
affyQCReport/inst/scripts
affyQCReport/inst/scripts/DilutionExample.R
affyQCReport/man
affyQCReport/man/QCReport.Rd
affyQCReport/man/affyQAReport.Rd
affyQCReport/man/borderQC1.Rd
affyQCReport/man/borderQC2.Rd
affyQCReport/man/correlationPlot.Rd
affyQCReport/man/signalDist.Rd
affyQCReport/man/titlePage.Rd
affyQCReport/vignettes
affyQCReport/vignettes/affyQCReport.Rnw
affyQCReport/vignettes/affyQCReport.bib
affyQCReport/vignettes/simpleaffyqcplot.png
affyQCReport/vignettes/simpleaffyqcplot.ps