QCReport: QC Report for AffyBatch objects

In affyQCReport: QC Report Generation for affyBatch objects

Description

Creates a QC report for an object of class AffyBatch.

Usage

QCReport(object,file="AffyQCReport.pdf",...)

Arguments

object	An object of class AffyBatch.
file	A valid filename for the output PDF file.
...	further arguments for plot function.

Details

This creates a 6 page QC report in PDF file format.

• The default output file is AffyQCReport.pdf created in the working directory.

• The AffyBatch object is not required to contain phenotypic data but that data is used if available.

• The CDF environment must be available for the method to work fully.

More details are available in the vignette.

Value

TRUE

Examples

  ## Not run: 
     
    library(affydata)
    data(Dilution)
    
  

    QCReport(Dilution,file="ExampleQC.pdf")   ##A QC report for the Example data will be generated
  
## End(Not run)

affyQCReport documentation built on Nov. 8, 2020, 5:40 p.m.