PWAmat: A function to compute the probe to KEGG pathway incidence...
In annotate: Annotation for microarrays
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
For a given chip we compute the mapping from probes to KEGG pathways.
Usage
1
Arguments
data
The name of the chip for which the incidence matrix should
be computed.
Details
Not much to say, just find which probes are in which pathways and
return the incidence matrix, with pathways as rows and probes as
columns.
It would be nice to be able to specify a set of probes to use, so that
one does not do perform the calculations using all probes if they are
not of interest.
Value
A matrix containing zero or one, depending on whether the probe
(row) is in a pathway (column).
Author(s)
R. Gentleman
See Also
Examples
1
2
annotate documentation built on Nov. 8, 2020, 8:14 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
For a given chip we compute the mapping from probes to KEGG pathways.
Usage
1 |
Arguments
data |
The name of the chip for which the incidence matrix should be computed. |
Details
Not much to say, just find which probes are in which pathways and return the incidence matrix, with pathways as rows and probes as columns.
It would be nice to be able to specify a set of probes to use, so that one does not do perform the calculations using all probes if they are not of interest.
Value
A matrix containing zero or one, depending on whether the probe (row) is in a pathway (column).
Author(s)
R. Gentleman
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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