inst/doc/motivation.R

In basilisk: Freezing Python Dependencies Inside Bioconductor Packages

## ---- echo=FALSE, results="hide"----------------------------------------------
knitr::opts_chunk$set(error=FALSE, warning=FALSE, message=FALSE)
library(basilisk)
library(BiocStyle)

## -----------------------------------------------------------------------------
my_env <- BasiliskEnvironment(envname="my_env_name",
    pkgname="ClientPackage",
    packages=c("pandas==0.25.1", "sklearn==0.22.1")
)

second_env <- BasiliskEnvironment(envname="second_env_name",
    pkgname="ClientPackage",
    packages=c("scipy=1.4.1", "numpy==1.17") 
)

## -----------------------------------------------------------------------------
sessionInfo()