Man pages for baySeq
Empirical Bayesian analysis of patterns of differential expression in count data

allModelsFunction to generate all possible models for a countData...
baySeq-classesbaySeq - classes
baySeq-packageEmpirical Bayesian analysis of patterns of differential...
bimodalSepA function that, given a numeric vector, finds the value...
CDPost'countData' object derived from data file 'simData' with...
CDPriors'countData' object derived from data file 'simData' with...
densityFunctionClass '"densityFunction"'
densityFunctionsLists all currently available densityFunctions.
getLibsizesEstimates library scaling factors (library sizes) for count...
getLikelihoodsFinds posterior likelihoods for each count or paired count as...
getPosteriorsAn internal function in the baySeq package for calculating...
getPriorsEstimates prior parameters for the underlying distributions...
getTPsGets the number of true positives in the top n counts...
makeOrderingsConstruct orderings for count data given a model structure...
marginaliseEqualComputes marginal likelihoods that two replicate groups are...
marginalisePairwiseComputes marginal likelihoods that two replicate groups...
methObservablesGeneration of intermediate values in likelihood estimation...
mobAnnotationAnnotation data for a set of small RNA loci derived from...
mobDataData from a set of small RNA sequencing experiments carried...
pairDataSimulated data for testing the baySeq package methods for...
plotMA.CD'MA'-plot for count data.
plotNullPriorPlots distribution of null function and shows the threshold...
plotPosteriorsPlots the posterior likelihoods estimated for a 'countData'...
plotPriorsPlots the density of the log values estimated for the mean...
selectTopSelects the top genomic events, based on posterior...
simDataSimulated data for testing the baySeq package methods
summarisePosteriorsSummarises expected number of genomic events given the...
topCountsGet the top counts corresponding to some group from a...
zimDataSimulated data for testing the baySeq package methods
baySeq documentation built on Nov. 17, 2017, 12:06 p.m.