pairData: Simulated data for testing the baySeq package methods for...

In baySeq: Empirical Bayesian analysis of patterns of differential expression in count data

Description

This data set is a matrix (‘pairData’) of simulated counts from a set of high-throughput sequencing data from a paired experimental design. The first four columns of data are to be paired with the second four columns of data respectively. The first two paired samples form one replicate group, the second two paired samples form another replicate group. The first hundred rows of the data are truly differentially expressed between replicate groups, the second hundred are differentially expressed between pairs, the remainder have no differential expression.

It is simulated according to a set of Poisson distributions whose parameters for each row are determined by a beta distribution on the relative proportions of data in each pairing.

Usage

pairData

Format

A matrix of which each of the eight columns represents a sample, and each row some discrete data (acquired by sequencing).

Source

Simulation.

baySeq documentation built on Nov. 8, 2020, 5:43 p.m.