Files in beadarraySNP
Normalization and reporting of Illumina SNP bead arrays
NAMESPACE
DESCRIPTION
build/vignette.rds
data/chr17.260.rda
data/QC.260.rda
R/SnpSetIlluminaConversion.r
R/SnpSetIlluminaNormalize.R
R/SnpSetIlluminaSegment.R
R/AllGenerics.R
R/SnpSetIlluminaReports.R
R/SnpSetIlluminaSmoothing.r
R/SnpSetIlluminaGenotypes.R
R/AllClasses.R
R/methods-QCIllumina.R
R/SnpSetIlluminaQC.R
R/methods-SnpSetIllumina.R
R/methods-SnpSetSegments.R
R/SnpSetIlluminaInteractive.R
vignettes/beadarraySNP.rnw
man/normalizeWithinArrays.SNP.Rd
man/plotGoldenGate4OPA.Rd
man/arrayType.Rd
man/pdfQC.Rd
man/normalizeBetweenAlleles.SNP.Rd
man/alterCN.Rd
man/calculateQCarray.Rd
man/dist.GT.Rd
man/read.SnpSetIllumina.Rd
man/removeLowQualitySamples.Rd
man/plotQC.Rd
man/backgroundCorrect.SNP.Rd
man/QCIllumina-class.Rd
man/smoothed.intensity.Rd
man/PolarTransforms.Rd
man/Sample_Map2Samplesheet.Rd
man/pdfChromosomesSmoothCopyNumber.Rd
man/compareGenotypes.Rd
man/getDNAindex.Rd
man/backgroundEstimate.Rd
man/BeadstudioQC.Rd
man/standardNormalization.Rd
man/SnpSetSegments-class.Rd
man/heterozygosity.Rd
man/reportGenotypeSegmentation.Rd
man/segmentate.Rd
man/GetBeadStudioSampleNames.Rd
man/calculateLOH.Rd
man/reportSamplePanelQC-methods.Rd
man/Datasets.Rd
man/class.SnpSetIllumina.Rd
man/CopynumberConversion.Rd
man/interactiveCNselect.Rd
man/removeLowQualityProbes.Rd
man/GenomicReports.Rd
man/createCNSummary.Rd
man/heterozygousSNPs.Rd
man/renameOPA.Rd
man/normalizeBetweenSubsamples.SNP.Rd
man/normalizeLoci.SNP.Rd
man/setRealCN.Rd
inst/doc/beadarraySNP.pdf
inst/doc/beadarraySNP.rnw
inst/doc/beadarraySNP.R
inst/testdata/1280260_R007_C010.csv
inst/testdata/1280260_R002_C012.csv
inst/testdata/1280260_R008_C010.csv
inst/testdata/4samples_opa4.csv
inst/testdata/targets.txt
inst/testdata/11186795_GS0005704-OPA_LinkageIV_v3.opa
inst/testdata/1280260_R003_C012.csv
inst/testdata/GS0005704-OPA_LocusByDNA.csv
