SnpSetSegments-class: Class "SnpSetSegments"

In beadarraySNP: Normalization and reporting of Illumina SNP bead arrays

Description

The SnpSetSegments class is a direct descendant of the SnpSetIllumina class, with an extra slot to define the genomic segments in each sample.

Objects from the Class

Objects can be created by calls of the form new("SnpSetSegments", assayData, phenoData, experimentData, annotation, protocolData, call, callProbability, G, R, cn.segments, featureData, extraData, ...).

Slots

cn.segments:

Object of class "list"

assayData:

Object of class "AssayData" see "SnpSetIllumina"

phenoData:

Object of class "AnnotatedDataFrame" see "SnpSetIllumina"

featureData:

Object of class "AnnotatedDataFrame" see "SnpSetIllumina"

experimentData:

Object of class "MIAME" see "SnpSetIllumina"

annotation:

Object of class "character" see "SnpSetIllumina"

protocolData:

Object of class "AnnotatedDataFrame" see "SnpSetIllumina"

.__classVersion__:

Object of class "Versions" "VersionedBiobase"

Extends

Class "SnpSetIllumina", directly. Class "eSet", by class "SnpSetIllumina", distance 2. Class "VersionedBiobase", by class "SnpSetIllumina", distance 3. Class "Versioned", by class "SnpSetIllumina", distance 4.

Methods

cn.segments

signature(object = "SnpSetSegments"): ...

cn.segments<-

signature(object = "SnpSetSegments", value = "list"): ...

initialize

signature(.Object = "SnpSetSegments"): ...

Note

This class is under development, and not usable in the current form

Author(s)

Jan Oosting

References

Corver et.al. Can Res dec 2008

See Also

segmentate

Examples

showClass("SnpSetSegments")

beadarraySNP documentation built on Nov. 8, 2020, 7:21 p.m.