BeadstudioQC: Quality control of Beadstudio report files
In beadarraySNP: Normalization and reporting of Illumina SNP bead arrays

Description Usage Arguments Value Author(s) See Also

When data has been imported using a Beadstudio samplesheet and reportfile, these functions can be used to generate quality measures

1 2	BeadstudioQC(object, QClist = list(), arrayType = "Sentrix96") pdfBeadstudioQC(QClist, basename = "beadstudio", by = 10)

`object`	`SnpSetIllumina` object.
`QClist`	list, result of previous call to `BeadstudioQC`
`arrayType`	character, type of array
`basename`	character, prefix for PDF files. This name will be added before the Barcode of the chip
`by`	integer, number of samples in barplot, see `reportSamplePanelQC`

The BeadstudioQC function generates a list of QCIllumina objects The pdfBeadstudioQC function generates a pdf-file for each QCIllumina object in the list

J. Oosting

pdfQC,calculateQCarray

beadarraySNP documentation built on Nov. 8, 2020, 7:21 p.m.