biobroom: Turn Bioconductor objects into tidy data frames

This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.

AuthorAndrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto
Date of publicationNone
MaintainerJohn D. Storey <jstorey@princeton.edu> and Andrew J. Bass <ajbass@princeton.edu>
LicenseLGPL
Version1.6.0
https://github.com/StoreyLab/biobroom

View on Bioconductor

Files in this package

biobroom/DESCRIPTION
biobroom/NAMESPACE
biobroom/NEWS
biobroom/R
biobroom/R/DESeq2_tidiers.R biobroom/R/ExpressionSet_tidiers.R biobroom/R/GRanges_tidiers.R biobroom/R/MSnSet_tidiers.R biobroom/R/SummarizedExperiment_tidiers.R biobroom/R/biobroom.R biobroom/R/edgeR_tidiers.R biobroom/R/edge_tidiers.R biobroom/R/hammer-data.R biobroom/R/limma_tidiers.R biobroom/R/list_tidiers.R biobroom/R/qvalue_tidiers.R biobroom/R/sva_tidiers.R biobroom/R/testing_helpers.R biobroom/R/utilities.R
biobroom/README.md
biobroom/build
biobroom/build/vignette.rds
biobroom/data
biobroom/data/hammer.rda
biobroom/inst
biobroom/inst/doc
biobroom/inst/doc/biobroom_vignette.R
biobroom/inst/doc/biobroom_vignette.Rmd
biobroom/inst/doc/biobroom_vignette.html
biobroom/man
biobroom/man/DESeq2_tidiers.Rd biobroom/man/ExpressionSet_tidiers.Rd biobroom/man/GRanges_tidiers.Rd biobroom/man/MSnSet_tidiers.Rd biobroom/man/SummarizedExperiment_tidiers.Rd biobroom/man/biobroom.Rd biobroom/man/edgeR_tidiers.Rd biobroom/man/edge_tidiers.Rd biobroom/man/hammer.Rd biobroom/man/limma_tidiers.Rd biobroom/man/list_tidiers.Rd biobroom/man/qvalue_tidiers.Rd biobroom/man/sva_tidiers.Rd
biobroom/tests
biobroom/tests/testthat
biobroom/tests/testthat.R
biobroom/tests/testthat/test-DESeq2_tidiers.R
biobroom/tests/testthat/test-ExpressionSet.R
biobroom/tests/testthat/test-edgeR_tidiers.R
biobroom/tests/testthat/test-limma_tidiers.R
biobroom/tests/testthat/test-testing_helpers.R
biobroom/vignettes
biobroom/vignettes/biobroom_vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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