Man pages for birte
Bayesian Inference of Regulatory Influence on Expression (biRte)
| birteFitRidge | Fit ridge regression model given a defined set of active... |
| birtePredict | Prediction of gene expression via biRte. |
| birteRun | Main interface for Bayesian Inference of Regulatory Influence... |
| EColiNetwork | Example TF-target graph from Regulon DB. |
| EColiOxygen | Example data set from E. Coli to sample TF activities. |
| estimateNetwork | Estimate network between active regulators using Nested... |
| getPotentialSwaps | Calculate swap partner for TF-/miRNA-target graph. This... |
| humanNetwork | Subset of regulator-target gene network for human |
| limmaAnalysis | Simple limma analysis on expression data with one contrast. |
| plotConvergence | Plot the marginal log-likelihood of the model along MCMC... |
| proposeInteractions | Propose possible regulator-regulator interactions that could... |
| simplify | Simplify regulator-target gene network via clustering. |
| simulateData | Simulate expression data. |
| suggestThreshold | Automatically suggest suitable threshold for marginal... |
| TFexpr | Transcription factor expression values for the... |
