Bayesian Inference of Regulatory Influence on Expression (biRte)

birteFitRidge | Fit ridge regression model given a defined set of active... |

birtePredict | Prediction of gene expression via biRte. |

birteRun | Main interface for Bayesian Inference of Regulatory Influence... |

EColiNetwork | Example TF-target graph from Regulon DB. |

EColiOxygen | Example data set from E. Coli to sample TF activities. |

estimateNetwork | Estimate network between active regulators using Nested... |

getPotentialSwaps | Calculate swap partner for TF-/miRNA-target graph. This... |

humanNetwork | Subset of regulator-target gene network for human |

limmaAnalysis | Simple limma analysis on expression data with one contrast. |

plotConvergence | Plot the marginal log-likelihood of the model along MCMC... |

proposeInteractions | Propose possible regulator-regulator interactions that could... |

simplify | Simplify regulator-target gene network via clustering. |

simulateData | Simulate expression data. |

suggestThreshold | Automatically suggest suitable threshold for marginal... |

TFexpr | Transcription factor expression values for the... |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.