Calculate swap partner for TF-/miRNA-target graph. This function is usually only called internally, but may be used to speed up repetitive calls to birteRun.
Calculates for TF-/miRNA-target graph all potential swap partner.
getPotentialSwaps(genesets, perc.overlap.cutoff=0.8, integer.id=TRUE)
Each entry corresponds to a regulator (miRNA, TF, other) and contains its target genes.
Percentage cutoff of minimal overlap between two miRNAs or TFs to be possible swap partner.
If TRUE, the swap partner are not output as characters, but as integer indices.
A list object, where each element corresponds to one regulator.
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