exonsToIntrons: Convert exon annotation GRanges to intron locations

Description Usage Arguments Value Author(s)

View source: R/readQueryFile.R

Description

Converts exon annotation to intron locations overlapping the branchpoint region for exculsion of non-branchpoint region SNPs Returns a character vector of chromosome locations

Usage

1
exonsToIntrons(exons, maxDist = 50)

Arguments

exons

GRanges containing exon co-ordinates. Should be produced by gtfToExons()

maxDist

Maximum distance from the 3' exon to create the branchpoint region.

Value

GRanges containing intron window co-ordinates

Author(s)

Beth Signal


branchpointer documentation built on Nov. 8, 2020, 6:16 p.m.