getPPT: Get the best polypyramidine tract
In branchpointer: Prediction of intronic splicing branchpoints
Description
Usage
Arguments
Value
Author(s)
View source: R/predictBranchpoints.R
Description
Takes a query genomic sequence, finds all potential polypyramidine tracts (PPTs)
between the test site and the annotated 3'exon.
Returns the distance to the start of the longest PPT, and its length.
Usage
1
Arguments
attributes
query attributes GenomicRanges
Value
distance to the start of the longest PPT, and its length
Author(s)
Beth Signal
branchpointer documentation built on Nov. 8, 2020, 6:16 p.m.
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Description Usage Arguments Value Author(s)
View source: R/predictBranchpoints.R
Description
Takes a query genomic sequence, finds all potential polypyramidine tracts (PPTs) between the test site and the annotated 3'exon. Returns the distance to the start of the longest PPT, and its length.
Usage
1 |
Arguments
attributes |
query attributes GenomicRanges |
Value
distance to the start of the longest PPT, and its length
Author(s)
Beth Signal
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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