Man pages for brendaDb
The BRENDA Enzyme Database
| acronyms | Information fields and their corresponding acronyms. |
| BiocycPathwayEnzymes | Get all EC numbers involved in a BioCyc pathway. |
| BiocycPathwayGenes | Get all genes involved in a BioCyc pathway. |
| brendaDb-package | brendaDb: the BRENDA enzyme database. |
| CleanECNumber | Remove deleted and transferred EC numbers. |
| ConfigBPCores | Configure the number of cores used by BiocParallel. |
| DownloadBrenda | Download and unzip the BRENDA text file. |
| ExtractField | Extract a specific field from a brenda.entries object. |
| ID2Enzyme | A helper function for converting names/synonyms to EC... |
| InitBrendaDeprecatedEntry | Create a 'brenda.deprecated.entry' object. |
| InitBrendaEntry | Create a 'brenda.entry' object. |
| ParseGeneric | Generic parser for a description string. |
| ParseNoDescription | Generic parser for a description string without extracted... |
| ParseProtein | Parse a "PROTEIN" entry. |
| ParseProteinNum | Parse protein information strings or reference strings. |
| ParseReaction | Parser for the description strings of certain... |
| ParseRecommendedName | Parse a "RECOMMENDED_NAME" entry into a string. |
| ParseReference | Parse a "REFERENCE" entry. |
| ParseSystematicName | Parse a "SYSTEMATIC_NAME" entry into a string. |
| PrettyPrintBrendaEntry | Print a brenda.entry in a tree view. |
| print.brenda.entries | Show the number of regular and transferred/deleted... |
| print.brenda.entry | Show the non-empty fields in the query result. |
| PrintTreeHelper | Print the tree structure with correct whitespace. |
| QueryBrenda | Query for multiple enzymes. |
| QueryBrendaBase | Query for a specific enzyme. |
| ReadBrenda | Read BRENDA text file into matrix. |
| ReadBrendaFile | Read raw BRENDA text file. |
| SelectOrganism | Select a subset of organisms in the brenda.query object. |
| SeparateEntries | Convert vector of lines to matrix. |
| SeparateSubentries | Preprocessing of entry description. |
| ShowFields | Show all unique BRENDA fields and their corresponding... |
