ParseGeneric: Generic parser for a description string.
In brendaDb: The BRENDA Enzyme Database
Description
Usage
Arguments
Details
Value
Description
Descriptions are generally structured as the following:
Protein information is included in '#'...#',
Literature citations are in '<...>',
Commentaries in '(...)', and
field-special information in '...'.
This function separates these fields into different columns.
Usage
1
ParseGeneric(description, acronym)
Arguments
description
A description string from one of the entries.
acronym
The acronym of the field. Can be found with ShowFields().
Details
The description column contains values extracted by BRENDA in each field.
The fieldInfo column contains different information in different fields:
In a SYNONYMS entry, it is either the source of the identifier, or part
of the description (a false positive).
In KM_VALUE, TURNOVER_NUMBER entries, it's the corresponding substrate.
Value
A tibble with columns: proteinID, description, fieldInfo,
commentary, and refID
brendaDb documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Details Value
Description
Descriptions are generally structured as the following:
Protein information is included in '#'...#',
Literature citations are in '<...>',
Commentaries in '(...)', and
field-special information in '...'.
This function separates these fields into different columns.
Usage
1 | ParseGeneric(description, acronym)
|
Arguments
description |
A description string from one of the entries. |
acronym |
The acronym of the field. Can be found with |
Details
The description column contains values extracted by BRENDA in each field.
The fieldInfo column contains different information in different fields:
In a
SYNONYMSentry, it is either the source of the identifier, or part of the description (a false positive).In
KM_VALUE,TURNOVER_NUMBERentries, it's the corresponding substrate.
Value
A tibble with columns: proteinID, description, fieldInfo,
commentary, and refID
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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